s typhi atcc 9207 Search Results


s typhi atcc 9207  (ATCC)
95
ATCC s typhi atcc 9207
S Typhi Atcc 9207, supplied by ATCC, used in various techniques. Bioz Stars score: 95/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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escherichia coli (migula) castellani and chalmers  (ATCC)
99
ATCC escherichia coli (migula) castellani and chalmers
Escherichia Coli (Migula) Castellani And Chalmers, supplied by ATCC, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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pseudomonas aeruginosa migula  (ATCC)
99
ATCC pseudomonas aeruginosa migula
Pseudomonas Aeruginosa Migula, supplied by ATCC, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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shigella flexneri castellani and chalmers  (ATCC)
98
ATCC shigella flexneri castellani and chalmers
Shigella Flexneri Castellani And Chalmers, supplied by ATCC, used in various techniques. Bioz Stars score: 98/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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klebsiella pneumoniae subsp.pneumoniae trevisan  (ATCC)
99
ATCC klebsiella pneumoniae subsp.pneumoniae trevisan
Klebsiella Pneumoniae Subsp.Pneumoniae Trevisan, supplied by ATCC, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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vibrio parahaemolyticus sakazaki et al  (ATCC)
99
ATCC vibrio parahaemolyticus sakazaki et al
Vibrio Parahaemolyticus Sakazaki Et Al, supplied by ATCC, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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enterococcus faecalis schleifer and kilpper-balz  (ATCC)
99
ATCC enterococcus faecalis schleifer and kilpper-balz
Enterococcus Faecalis Schleifer And Kilpper Balz, supplied by ATCC, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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yersinia enterocolitica subsp.enterocolitica frederiksen  (ATCC)
96
ATCC yersinia enterocolitica subsp.enterocolitica frederiksen
Yersinia Enterocolitica Subsp.Enterocolitica Frederiksen, supplied by ATCC, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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salmonella enterica subsp.enterica le minor and popoff serovar typhimurium  (ATCC)
99
ATCC salmonella enterica subsp.enterica le minor and popoff serovar typhimurium
Salmonella Enterica Subsp.Enterica Le Minor And Popoff Serovar Typhimurium, supplied by ATCC, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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s enterica serovar typhi atcc  (ATCC)
96
ATCC s enterica serovar typhi atcc
16S rRNA gene sequence similarity and divergence a of each pair for E. coli, Salmonella, Shigella, Enterobacter, Klebsiella , and Yersinia calculated by DNASTAR
S Enterica Serovar Typhi Atcc, supplied by ATCC, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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9207 shigella boydii  (ATCC)
95
ATCC 9207 shigella boydii
Comparison of culture and microarray results with clinical outcome
9207 Shigella Boydii, supplied by ATCC, used in various techniques. Bioz Stars score: 95/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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e coli  (ATCC)
99
ATCC e coli
Comparison of culture and microarray results with clinical outcome
E Coli, supplied by ATCC, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Image Search Results


16S rRNA gene sequence similarity and divergence a of each pair for E. coli, Salmonella, Shigella, Enterobacter, Klebsiella , and Yersinia calculated by DNASTAR

Journal:

Article Title: Phylogenetic Analysis of Salmonella , Shigella , and Escherichia coli Strains on the Basis of the gyrB Gene Sequence

doi: 10.1128/JCM.40.8.2779-2785.2002

Figure Lengend Snippet: 16S rRNA gene sequence similarity and divergence a of each pair for E. coli, Salmonella, Shigella, Enterobacter, Klebsiella , and Yersinia calculated by DNASTAR

Article Snippet: The sequence data for phylogenetic analysis were taken from the GenBank nucleotide sequence database for the following strains: E. coli (ATCC 25922), S. enterica serovar Enteritidis (SE22), S. enterica serovar Paratyphi A (ATCC 54388), S. enterica serovar Paratyphi B, S. enterica serovar Typhi (ATCC 19430), S. enterica serovar Typhimurium (ATCC 13311), S. boydii (ATCC 9027), S. flexneri (ATCC 29903), S. sonnei (ATCC 25931), Y. enterocolitica (ATCC 9610), E. aerogenes (NCTC10006T), E. cloacae (ATCC 13047T), K. oxytoca (ATCC 13182T), and K. pneumoniae (ATCC 13883). table ft1 table-wrap mode="anchored" t5 TABLE 1. caption a7 Strain no. Strain name % Similarity with strain no. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 1 E. coli ATCC 25922 99.6 97.4 97.2 96.5 95.4 99.6 99.9 99.8 95.0 95.9 95.4 95.1 93.0 2 S. enterica serovar Enteritidis ES22 2.6 97.6 97.4 97.4 97.1 96.7 96.9 96.9 95.1 96.9 95.1 95.5 91.6 3 S. enterica serovar Paratyphi A ATCC 54388 2.3 2.3 98.6 97.6 96.7 97.5 97.4 97.3 94.6 96.2 94.8 94.8 91.5 4 S. enterica serovar Paratyphi B P1 2.5 2.6 1.3 97.1 96.3 97.2 97.2 97.1 94.5 96.1 94.5 94.6 91.3 5 S. enterica serovar Typhi ATCC 19430 3.4 2.3 2.1 2.6 97.8 96.8 96.7 96.6 95.6 97.4 95.7 95.9 92.0 6 S. enterica serovar Typhimurium ATCC 13311 3.4 2.1 2.4 2.9 1.1 95.4 95.4 95.3 95.0 96.6 95.3 95.4 91.1 7 S. boydii ATCC 9207 0.4 2.8 2.1 2.4 3.1 3.4 99.7 99.7 94.6 95.5 95.1 94.7 92.8 8 S. flexneri ATCC 29903 0.1 2.6 2.2 2.4 3.3 3.4 0.3 99.9 94.9 95.7 95.3 95.0 93.0 9 S. sonnei ATCC 25931 0.2 2.6 2.3 2.5 3.4 3.4 0.3 0.1 94.8 95.6 95.1 94.8 93.0 10 E. aerogenes NCTC10006T 4.0 4.2 4.8 5.0 3.4 3.6 4.3 4.0 4.1 97.5 97.8 98.1 93.2 11 E. cloacae ATCC 13047T 3.3 2.6 3.1 3.4 1.6 1.9 3.6 3.3 3.4 2.2 97.2 98.3 92.1 12 K. oxytoca ATCC 13182T 3.8 4.4 4.8 5.1 3.4 3.4 3.9 3.8 3.9 1.8 2.6 97.4 92.3 13 K. pneumoniae ATCC 13883 4.0 3.9 4.5 4.8 3.1 3.1 4.2 4.0 4.0 1.5 1.5 2.6 93.0 14 Y. enterocolitica ATCC 9610 5.6 6.7 6.9 7.1 6.8 6.6 5.9 5.6 5.7 4.4 6.2 5.7 4.9 Open in a separate window a Percent divergence is calculated by comparing sequence pairs in relation to the phylogeny reconstructed by MegAlign (DNASTAR).

Techniques: Sequencing

Phylogenetic tree based on the nucleotide sequences of 16S rRNA genes. The 16S rRNA sequences were adjusted to 1,435 bases, and the tree was constructed by the neighbor-joining method, using the computer program MegAlign (DNASTAR Inc.). The scale indicates the percentage of base difference (percent divergence). The sequence data for phylogenetic analysis were taken from the GenBank nucleotide sequence database for the following strains: E. coli (ATCC 25922), S. enterica serovar Enteritidis (SE22), S. enterica serovar Paratyphi A (ATCC 54388), S. enterica serovar Paratyphi B, S. enterica serovar Typhi (ATCC 19430), S. enterica serovar Typhimurium (ATCC 13311), S. boydii (ATCC 9027), S. flexneri (ATCC 29903), S. sonnei (ATCC 25931), Y. enterocolitica (ATCC 9610), E. aerogenes (NCTC10006T), E. cloacae (ATCC 13047T), K. oxytoca (ATCC 13182T), and K. pneumoniae (ATCC 13883).

Journal:

Article Title: Phylogenetic Analysis of Salmonella , Shigella , and Escherichia coli Strains on the Basis of the gyrB Gene Sequence

doi: 10.1128/JCM.40.8.2779-2785.2002

Figure Lengend Snippet: Phylogenetic tree based on the nucleotide sequences of 16S rRNA genes. The 16S rRNA sequences were adjusted to 1,435 bases, and the tree was constructed by the neighbor-joining method, using the computer program MegAlign (DNASTAR Inc.). The scale indicates the percentage of base difference (percent divergence). The sequence data for phylogenetic analysis were taken from the GenBank nucleotide sequence database for the following strains: E. coli (ATCC 25922), S. enterica serovar Enteritidis (SE22), S. enterica serovar Paratyphi A (ATCC 54388), S. enterica serovar Paratyphi B, S. enterica serovar Typhi (ATCC 19430), S. enterica serovar Typhimurium (ATCC 13311), S. boydii (ATCC 9027), S. flexneri (ATCC 29903), S. sonnei (ATCC 25931), Y. enterocolitica (ATCC 9610), E. aerogenes (NCTC10006T), E. cloacae (ATCC 13047T), K. oxytoca (ATCC 13182T), and K. pneumoniae (ATCC 13883).

Article Snippet: The sequence data for phylogenetic analysis were taken from the GenBank nucleotide sequence database for the following strains: E. coli (ATCC 25922), S. enterica serovar Enteritidis (SE22), S. enterica serovar Paratyphi A (ATCC 54388), S. enterica serovar Paratyphi B, S. enterica serovar Typhi (ATCC 19430), S. enterica serovar Typhimurium (ATCC 13311), S. boydii (ATCC 9027), S. flexneri (ATCC 29903), S. sonnei (ATCC 25931), Y. enterocolitica (ATCC 9610), E. aerogenes (NCTC10006T), E. cloacae (ATCC 13047T), K. oxytoca (ATCC 13182T), and K. pneumoniae (ATCC 13883). table ft1 table-wrap mode="anchored" t5 TABLE 1. caption a7 Strain no. Strain name % Similarity with strain no. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 1 E. coli ATCC 25922 99.6 97.4 97.2 96.5 95.4 99.6 99.9 99.8 95.0 95.9 95.4 95.1 93.0 2 S. enterica serovar Enteritidis ES22 2.6 97.6 97.4 97.4 97.1 96.7 96.9 96.9 95.1 96.9 95.1 95.5 91.6 3 S. enterica serovar Paratyphi A ATCC 54388 2.3 2.3 98.6 97.6 96.7 97.5 97.4 97.3 94.6 96.2 94.8 94.8 91.5 4 S. enterica serovar Paratyphi B P1 2.5 2.6 1.3 97.1 96.3 97.2 97.2 97.1 94.5 96.1 94.5 94.6 91.3 5 S. enterica serovar Typhi ATCC 19430 3.4 2.3 2.1 2.6 97.8 96.8 96.7 96.6 95.6 97.4 95.7 95.9 92.0 6 S. enterica serovar Typhimurium ATCC 13311 3.4 2.1 2.4 2.9 1.1 95.4 95.4 95.3 95.0 96.6 95.3 95.4 91.1 7 S. boydii ATCC 9207 0.4 2.8 2.1 2.4 3.1 3.4 99.7 99.7 94.6 95.5 95.1 94.7 92.8 8 S. flexneri ATCC 29903 0.1 2.6 2.2 2.4 3.3 3.4 0.3 99.9 94.9 95.7 95.3 95.0 93.0 9 S. sonnei ATCC 25931 0.2 2.6 2.3 2.5 3.4 3.4 0.3 0.1 94.8 95.6 95.1 94.8 93.0 10 E. aerogenes NCTC10006T 4.0 4.2 4.8 5.0 3.4 3.6 4.3 4.0 4.1 97.5 97.8 98.1 93.2 11 E. cloacae ATCC 13047T 3.3 2.6 3.1 3.4 1.6 1.9 3.6 3.3 3.4 2.2 97.2 98.3 92.1 12 K. oxytoca ATCC 13182T 3.8 4.4 4.8 5.1 3.4 3.4 3.9 3.8 3.9 1.8 2.6 97.4 92.3 13 K. pneumoniae ATCC 13883 4.0 3.9 4.5 4.8 3.1 3.1 4.2 4.0 4.0 1.5 1.5 2.6 93.0 14 Y. enterocolitica ATCC 9610 5.6 6.7 6.9 7.1 6.8 6.6 5.9 5.6 5.7 4.4 6.2 5.7 4.9 Open in a separate window a Percent divergence is calculated by comparing sequence pairs in relation to the phylogeny reconstructed by MegAlign (DNASTAR).

Techniques: Construct, Sequencing

gyrB gene sequence similarity and divergence a of each pair for E. coli, Salmonella, Shigella, Enterobacter, Klebsiella , and Yersinia calculated by DNASTAR

Journal:

Article Title: Phylogenetic Analysis of Salmonella , Shigella , and Escherichia coli Strains on the Basis of the gyrB Gene Sequence

doi: 10.1128/JCM.40.8.2779-2785.2002

Figure Lengend Snippet: gyrB gene sequence similarity and divergence a of each pair for E. coli, Salmonella, Shigella, Enterobacter, Klebsiella , and Yersinia calculated by DNASTAR

Article Snippet: The sequence data for phylogenetic analysis were taken from the GenBank nucleotide sequence database for the following strains: E. coli (ATCC 25922), S. enterica serovar Enteritidis (SE22), S. enterica serovar Paratyphi A (ATCC 54388), S. enterica serovar Paratyphi B, S. enterica serovar Typhi (ATCC 19430), S. enterica serovar Typhimurium (ATCC 13311), S. boydii (ATCC 9027), S. flexneri (ATCC 29903), S. sonnei (ATCC 25931), Y. enterocolitica (ATCC 9610), E. aerogenes (NCTC10006T), E. cloacae (ATCC 13047T), K. oxytoca (ATCC 13182T), and K. pneumoniae (ATCC 13883). table ft1 table-wrap mode="anchored" t5 TABLE 1. caption a7 Strain no. Strain name % Similarity with strain no. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 1 E. coli ATCC 25922 99.6 97.4 97.2 96.5 95.4 99.6 99.9 99.8 95.0 95.9 95.4 95.1 93.0 2 S. enterica serovar Enteritidis ES22 2.6 97.6 97.4 97.4 97.1 96.7 96.9 96.9 95.1 96.9 95.1 95.5 91.6 3 S. enterica serovar Paratyphi A ATCC 54388 2.3 2.3 98.6 97.6 96.7 97.5 97.4 97.3 94.6 96.2 94.8 94.8 91.5 4 S. enterica serovar Paratyphi B P1 2.5 2.6 1.3 97.1 96.3 97.2 97.2 97.1 94.5 96.1 94.5 94.6 91.3 5 S. enterica serovar Typhi ATCC 19430 3.4 2.3 2.1 2.6 97.8 96.8 96.7 96.6 95.6 97.4 95.7 95.9 92.0 6 S. enterica serovar Typhimurium ATCC 13311 3.4 2.1 2.4 2.9 1.1 95.4 95.4 95.3 95.0 96.6 95.3 95.4 91.1 7 S. boydii ATCC 9207 0.4 2.8 2.1 2.4 3.1 3.4 99.7 99.7 94.6 95.5 95.1 94.7 92.8 8 S. flexneri ATCC 29903 0.1 2.6 2.2 2.4 3.3 3.4 0.3 99.9 94.9 95.7 95.3 95.0 93.0 9 S. sonnei ATCC 25931 0.2 2.6 2.3 2.5 3.4 3.4 0.3 0.1 94.8 95.6 95.1 94.8 93.0 10 E. aerogenes NCTC10006T 4.0 4.2 4.8 5.0 3.4 3.6 4.3 4.0 4.1 97.5 97.8 98.1 93.2 11 E. cloacae ATCC 13047T 3.3 2.6 3.1 3.4 1.6 1.9 3.6 3.3 3.4 2.2 97.2 98.3 92.1 12 K. oxytoca ATCC 13182T 3.8 4.4 4.8 5.1 3.4 3.4 3.9 3.8 3.9 1.8 2.6 97.4 92.3 13 K. pneumoniae ATCC 13883 4.0 3.9 4.5 4.8 3.1 3.1 4.2 4.0 4.0 1.5 1.5 2.6 93.0 14 Y. enterocolitica ATCC 9610 5.6 6.7 6.9 7.1 6.8 6.6 5.9 5.6 5.7 4.4 6.2 5.7 4.9 Open in a separate window a Percent divergence is calculated by comparing sequence pairs in relation to the phylogeny reconstructed by MegAlign (DNASTAR).

Techniques: Sequencing

Phylogenetic tree based on the nucleotide sequences of gyrB genes. The gyrB nucleotide sequences were adjusted to 1,171 bases, and the tree was constructed by the neighbor-joining method, using the computer program MegAlign (DNASTAR Inc.). The scale indicates the percentage of base difference (percent divergence). The mean sequence obtained from direct sequencing of PCR products was used for the following strains: E. coli (ATCC 25922), S. enterica serovar Enteritidis (isolate), S. enterica serovar Paratyphi A (isolate), S. enterica serovar Paratyphi B (ATCC 8759), S. enterica serovar Typhi (isolate), S. enterica serovar Typhimurium (ATCC 14028), S. boydii (isolate), S. flexneri (ATCC 12022), S. sonnei (ATCC 11060), Y. enterocolitica (ATCC 23715), E. aerogenes (ATCC 13048), E. cloacae (ATCC 13047), K. oxytoca (isolate), and K. pneumoniae (isolate).

Journal:

Article Title: Phylogenetic Analysis of Salmonella , Shigella , and Escherichia coli Strains on the Basis of the gyrB Gene Sequence

doi: 10.1128/JCM.40.8.2779-2785.2002

Figure Lengend Snippet: Phylogenetic tree based on the nucleotide sequences of gyrB genes. The gyrB nucleotide sequences were adjusted to 1,171 bases, and the tree was constructed by the neighbor-joining method, using the computer program MegAlign (DNASTAR Inc.). The scale indicates the percentage of base difference (percent divergence). The mean sequence obtained from direct sequencing of PCR products was used for the following strains: E. coli (ATCC 25922), S. enterica serovar Enteritidis (isolate), S. enterica serovar Paratyphi A (isolate), S. enterica serovar Paratyphi B (ATCC 8759), S. enterica serovar Typhi (isolate), S. enterica serovar Typhimurium (ATCC 14028), S. boydii (isolate), S. flexneri (ATCC 12022), S. sonnei (ATCC 11060), Y. enterocolitica (ATCC 23715), E. aerogenes (ATCC 13048), E. cloacae (ATCC 13047), K. oxytoca (isolate), and K. pneumoniae (isolate).

Article Snippet: The sequence data for phylogenetic analysis were taken from the GenBank nucleotide sequence database for the following strains: E. coli (ATCC 25922), S. enterica serovar Enteritidis (SE22), S. enterica serovar Paratyphi A (ATCC 54388), S. enterica serovar Paratyphi B, S. enterica serovar Typhi (ATCC 19430), S. enterica serovar Typhimurium (ATCC 13311), S. boydii (ATCC 9027), S. flexneri (ATCC 29903), S. sonnei (ATCC 25931), Y. enterocolitica (ATCC 9610), E. aerogenes (NCTC10006T), E. cloacae (ATCC 13047T), K. oxytoca (ATCC 13182T), and K. pneumoniae (ATCC 13883). table ft1 table-wrap mode="anchored" t5 TABLE 1. caption a7 Strain no. Strain name % Similarity with strain no. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 1 E. coli ATCC 25922 99.6 97.4 97.2 96.5 95.4 99.6 99.9 99.8 95.0 95.9 95.4 95.1 93.0 2 S. enterica serovar Enteritidis ES22 2.6 97.6 97.4 97.4 97.1 96.7 96.9 96.9 95.1 96.9 95.1 95.5 91.6 3 S. enterica serovar Paratyphi A ATCC 54388 2.3 2.3 98.6 97.6 96.7 97.5 97.4 97.3 94.6 96.2 94.8 94.8 91.5 4 S. enterica serovar Paratyphi B P1 2.5 2.6 1.3 97.1 96.3 97.2 97.2 97.1 94.5 96.1 94.5 94.6 91.3 5 S. enterica serovar Typhi ATCC 19430 3.4 2.3 2.1 2.6 97.8 96.8 96.7 96.6 95.6 97.4 95.7 95.9 92.0 6 S. enterica serovar Typhimurium ATCC 13311 3.4 2.1 2.4 2.9 1.1 95.4 95.4 95.3 95.0 96.6 95.3 95.4 91.1 7 S. boydii ATCC 9207 0.4 2.8 2.1 2.4 3.1 3.4 99.7 99.7 94.6 95.5 95.1 94.7 92.8 8 S. flexneri ATCC 29903 0.1 2.6 2.2 2.4 3.3 3.4 0.3 99.9 94.9 95.7 95.3 95.0 93.0 9 S. sonnei ATCC 25931 0.2 2.6 2.3 2.5 3.4 3.4 0.3 0.1 94.8 95.6 95.1 94.8 93.0 10 E. aerogenes NCTC10006T 4.0 4.2 4.8 5.0 3.4 3.6 4.3 4.0 4.1 97.5 97.8 98.1 93.2 11 E. cloacae ATCC 13047T 3.3 2.6 3.1 3.4 1.6 1.9 3.6 3.3 3.4 2.2 97.2 98.3 92.1 12 K. oxytoca ATCC 13182T 3.8 4.4 4.8 5.1 3.4 3.4 3.9 3.8 3.9 1.8 2.6 97.4 92.3 13 K. pneumoniae ATCC 13883 4.0 3.9 4.5 4.8 3.1 3.1 4.2 4.0 4.0 1.5 1.5 2.6 93.0 14 Y. enterocolitica ATCC 9610 5.6 6.7 6.9 7.1 6.8 6.6 5.9 5.6 5.7 4.4 6.2 5.7 4.9 Open in a separate window a Percent divergence is calculated by comparing sequence pairs in relation to the phylogeny reconstructed by MegAlign (DNASTAR).

Techniques: Construct, Sequencing

Phylogenetic tree based on the nucleotide sequences of gyrB genes taken from 200 clinical specimens. The gyrB nucleotide sequences were adjusted to 1,171 bases, and the tree was constructed by the neighbor-joining method, using the computer program MegAlign (DNASTAR Inc.). The scale indicates the percentage of base difference (percent divergence). Amplified gyrB genes from five subspecies of Salmonella, three species of Shigella, two species of Enterobacter, one species of E. coli, two species of Klebsiella, and Yersinia species used as an outgroup were sequenced. Bacterial strains of the same species with the same gene sequence are displayed in one group; for example, the cluster labeled S. enterica serovar Enteritidis P1-5 includes five strains of S. enterica serovar Enteritidis with identical gyrB sequences which were isolated from patients.

Journal:

Article Title: Phylogenetic Analysis of Salmonella , Shigella , and Escherichia coli Strains on the Basis of the gyrB Gene Sequence

doi: 10.1128/JCM.40.8.2779-2785.2002

Figure Lengend Snippet: Phylogenetic tree based on the nucleotide sequences of gyrB genes taken from 200 clinical specimens. The gyrB nucleotide sequences were adjusted to 1,171 bases, and the tree was constructed by the neighbor-joining method, using the computer program MegAlign (DNASTAR Inc.). The scale indicates the percentage of base difference (percent divergence). Amplified gyrB genes from five subspecies of Salmonella, three species of Shigella, two species of Enterobacter, one species of E. coli, two species of Klebsiella, and Yersinia species used as an outgroup were sequenced. Bacterial strains of the same species with the same gene sequence are displayed in one group; for example, the cluster labeled S. enterica serovar Enteritidis P1-5 includes five strains of S. enterica serovar Enteritidis with identical gyrB sequences which were isolated from patients.

Article Snippet: The sequence data for phylogenetic analysis were taken from the GenBank nucleotide sequence database for the following strains: E. coli (ATCC 25922), S. enterica serovar Enteritidis (SE22), S. enterica serovar Paratyphi A (ATCC 54388), S. enterica serovar Paratyphi B, S. enterica serovar Typhi (ATCC 19430), S. enterica serovar Typhimurium (ATCC 13311), S. boydii (ATCC 9027), S. flexneri (ATCC 29903), S. sonnei (ATCC 25931), Y. enterocolitica (ATCC 9610), E. aerogenes (NCTC10006T), E. cloacae (ATCC 13047T), K. oxytoca (ATCC 13182T), and K. pneumoniae (ATCC 13883). table ft1 table-wrap mode="anchored" t5 TABLE 1. caption a7 Strain no. Strain name % Similarity with strain no. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 1 E. coli ATCC 25922 99.6 97.4 97.2 96.5 95.4 99.6 99.9 99.8 95.0 95.9 95.4 95.1 93.0 2 S. enterica serovar Enteritidis ES22 2.6 97.6 97.4 97.4 97.1 96.7 96.9 96.9 95.1 96.9 95.1 95.5 91.6 3 S. enterica serovar Paratyphi A ATCC 54388 2.3 2.3 98.6 97.6 96.7 97.5 97.4 97.3 94.6 96.2 94.8 94.8 91.5 4 S. enterica serovar Paratyphi B P1 2.5 2.6 1.3 97.1 96.3 97.2 97.2 97.1 94.5 96.1 94.5 94.6 91.3 5 S. enterica serovar Typhi ATCC 19430 3.4 2.3 2.1 2.6 97.8 96.8 96.7 96.6 95.6 97.4 95.7 95.9 92.0 6 S. enterica serovar Typhimurium ATCC 13311 3.4 2.1 2.4 2.9 1.1 95.4 95.4 95.3 95.0 96.6 95.3 95.4 91.1 7 S. boydii ATCC 9207 0.4 2.8 2.1 2.4 3.1 3.4 99.7 99.7 94.6 95.5 95.1 94.7 92.8 8 S. flexneri ATCC 29903 0.1 2.6 2.2 2.4 3.3 3.4 0.3 99.9 94.9 95.7 95.3 95.0 93.0 9 S. sonnei ATCC 25931 0.2 2.6 2.3 2.5 3.4 3.4 0.3 0.1 94.8 95.6 95.1 94.8 93.0 10 E. aerogenes NCTC10006T 4.0 4.2 4.8 5.0 3.4 3.6 4.3 4.0 4.1 97.5 97.8 98.1 93.2 11 E. cloacae ATCC 13047T 3.3 2.6 3.1 3.4 1.6 1.9 3.6 3.3 3.4 2.2 97.2 98.3 92.1 12 K. oxytoca ATCC 13182T 3.8 4.4 4.8 5.1 3.4 3.4 3.9 3.8 3.9 1.8 2.6 97.4 92.3 13 K. pneumoniae ATCC 13883 4.0 3.9 4.5 4.8 3.1 3.1 4.2 4.0 4.0 1.5 1.5 2.6 93.0 14 Y. enterocolitica ATCC 9610 5.6 6.7 6.9 7.1 6.8 6.6 5.9 5.6 5.7 4.4 6.2 5.7 4.9 Open in a separate window a Percent divergence is calculated by comparing sequence pairs in relation to the phylogeny reconstructed by MegAlign (DNASTAR).

Techniques: Construct, Amplification, Sequencing, Labeling, Isolation

Comparison of culture and microarray results with clinical outcome

Journal:

Article Title: Detection and Identification of Mycobacterium Species Isolates by DNA Microarray

doi: 10.1128/JCM.41.6.2605-2615.2003

Figure Lengend Snippet: Comparison of culture and microarray results with clinical outcome

Article Snippet: Source Results by: Culture Microarray analysis 1 Sputum M. scrofulaceum M. scrofulaceum 2 Sputum M. tuberculosis M. tuberculosis 3 Sputum M. kansasii M. kansaii 4 Sputum M. tuberculosis M. tuberculosis 5 Sputum M. intracelluare M. intracelluare 6 Sputum MAC M. intracelluare 7 Sputum MAC M. avium 8 Sputum M. gordonae M. gordonae 9 Sputum M. kansasii M. kansasii 10 Sputum MAC M. intracelluare 11 Sputum M. gordonae M. gordonae 12 Sputum M. scrofulaceum M. scrofulaceum 13 Sputum MAC M. avium 14 Sputum MAC M. avium 15 Sputum MAC M. avium-M. intracelluare 16 Sputum M. kansasii M. kansasii 17 Sputum M. kansasii M. kansasii 18 Sputum M. kansasii M. kansasii 19 Sputum M. kansasii M. kansasii 20 Sputum M. kansasii M. kansasii 21 Sputum M. kansasii M. kansasii 22 Sputum M. kansasii M. kansasii 23 Sputum M. kansasii M. kansasii 24 Sputum M. kansasii M. kansasii 25 Sputum M. kansasii M. kansasii 26 Sputum M. kansasii M. kansasii 27 Sputum M. kansasii M. kansasii 28 Sputum M. kansasii M. kansasii 29 Sputum M. kansasii M. kansasii 30 Sputum M. kansasii M. kansasii 31 Sputum M. kansasii M. kansasii 32 Sputum M. kansasii M. kansasii 33 Sputum M. kansasii M. kansasii 34 Sputum M. avium M. avium 35 Sputum M. gordonae M. gordonae 36 Sputum M. intracelluare M. intracelluare 37 Sputum M. gordonae M. gordonae 38 Sputum M. szulgai M. szulgai 39 Sputum M. gordonae M. gordonae 40 Sputum M. gordonae M. gordonae 41 ATCC 29903 Shigella flexneri — a 42 ATCC 25931 Shigella sonnei — 43 ATCC 9207 Shigella boydii — 44 ATCC 54388 Salmonella enterica b serovar Parathyphi A — 45 ATCC 8759 Salmonella enterica serovar Parathyphi B — 46 ATCC 19430 Salmonella enterica serovar Typhi — 47 ES 22 Salmonella enterica serovar Enteritidis — 48 Clinical isolate Salmonella enterica serovar Oranienburg — 49 Clinical isolate Salmonella enterica serovar Chester — 50 ATCC 14028 Salmonella enterica serovar Typhimurium — 51 ATCC 13883 Klebsiella pneumoniae — 52 ATCC 23715 Yersinia enterocolitica — 53 ATCC 12453 Proteus mirabilis — 54 ATCC 11638 Helicobactor pylori — 55 ATCC 33560 Campylobacter jejunii — 56 ATCC 25922 Escherichia coli — 57 ATCC 2171 Vibrio alginolyticus — 58 ATCC 17802 Vibrio parahaemolyticus — 59 ATCC 49226 Neisseria gonorrhoeae — 60 ATCC 13077 Neisseria meningitisdis — 61 ATCC 23355 Enterobacter cloacae — 62 ATCC 19433 Enterococcus feacalis — 63 ATCC 65389 Staphylococcus aureus — 64 ATCC 6303 Streptococcus pnemoniae — 65 ATCC 19615 Streptococcus pyogenes — 66 ATCC 13813 Streptococcus agalactiae — 67 ATCC 16145 Pseudomonas aeruginosa — 68 ATCC 29342 Mycoplasma pneumoniae — Open in a separate window a —, absence of amplification products. b Salmonella enterica subsp. enterica.

Techniques: Microarray